Workflow: ROH_workflow.cwl

Fetched 2023-01-12 02:57:36 GMT
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Inputs

ID Type Title Doc
script File
ROH_chr File[]
vcf_file File
sample_mapping File

Steps

ID Runs Label Doc
ROH_calc
../../tools/roh_comparison/ROH_comparison.cwl (CommandLineTool)

Run script to calculate het calls in known region of homozygosity (ROH)

ROH_combine
../../tools/roh_comparison/ROH_combine.cwl (CommandLineTool)

Concatenate vcfs

Outputs

ID Type Label Doc
stats File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/8d0588a3fc25c9b91369f3cbbe9066d0cd4b9418/cwl/workflows/analysis-workflows/ROH_workflow.cwl