Workflow: ROH_workflow.cwl
Fetched 2023-01-12 02:39:17 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| script | File | ||
| ROH_chr | File[] | ||
| vcf_file | File | ||
| sample_mapping | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| ROH_calc |
../../tools/roh_comparison/ROH_comparison.cwl
(CommandLineTool)
|
Run script to calculate het calls in known region of homozygosity (ROH) |
|
| ROH_combine |
../../tools/roh_comparison/ROH_combine.cwl
(CommandLineTool)
|
Concatenate vcfs |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| stats | File |
Permalink:
https://w3id.org/cwl/view/git/8c9284622ea52a2f0bf24533b46ead59d35a32e9/cwl/workflows/analysis-workflows/ROH_workflow.cwl
