Workflow: upload_results.cwl
Fetched 2023-01-12 03:37:39 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| gvcf | File | ||
| bam_uri | String | ||
| gvcf_uri | String | ||
| bam_index | File | ||
| aws_config | File | ||
| gvcf_index | File | ||
| s3_profile | String | ||
| s3_endpoint | String | ||
| bam_index_uri | String | ||
| gvcf_index_uri | String | ||
| aws_shared_credentials | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| upload_bam |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
| upload_gvcf |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
| upload_bam_index |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
| upload_gvcf_index |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| time_metrics_from_upload_bam | File | ||
| time_metrics_from_upload_gvcf | File | ||
| time_metrics_from_upload_bam_index | File | ||
| time_metrics_from_upload_gvcf_index | File |
Permalink:
https://w3id.org/cwl/view/git/1595f2bc453663c9e71c1a2d60729f481921029e/genomel/cwl/workflows/utils/upload_results.cwl
