Workflow: A workflow that aligns a fasta file and provides statistics on the SAM file
Fetched 2023-01-04 17:42:52 GMT
Verified with cwltool version 3.1.20221201130942
A workflow that aligns a fasta file and provides statistics on the SAM file
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input_sam | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| flagstat |
samtools/metrics.cwl#metrics_tool
(CommandLineTool)
|
metrics tool |
A tool that provides statistics for a SAM file |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_metrics | File |
Permalink:
https://w3id.org/cwl/view/git/26287c69fcbf4b9d7021a393119503cb47105804/version_1_2/sub_workflow_metrics.cwl
