Workflow: qa_check_subwf.cwl

Fetched 2024-11-29 04:39:30 GMT

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

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Inputs

ID Type Title Doc
vcfs File[]
normal_bam File
tumour_bam File
tumour_record https://w3id.org/cwl/view/git/40bf56daf9edab82e0f964dbd6961ca1111cd35f/TumourType.yaml#TumourType
normal_minibam File
tumour_minibam File

Steps

ID Runs Label Doc
check_files
qa_check_subwf.cwl#check_files/df0cbcf7-bf3d-4c0d-865c-449da4a65c9e (CommandLineTool)

Outputs

ID Type Label Doc
qa_result File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/40bf56daf9edab82e0f964dbd6961ca1111cd35f/qa_check_subwf.cwl