Workflow: Run genomic CMsearch (5S rRNA)
Fetched 2023-01-04 23:34:06 GMT
Verified with cwltool version 3.1.20221201130942
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source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| asn_cache | Directory | ||
| model_path | File | ||
| rfam_stockholm | File | ||
| rfam_amendments | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qdump |
gpx_qdump.cwl
(CommandLineTool)
|
Run genomic CMsearch (5S rRNA), gather | |
| annot_merge |
annot_merge.cwl
(CommandLineTool)
|
Post-process CMsearch annotations | |
| gpx_qsubmit |
gpx_qsubmit_gcmsearch.cwl
(CommandLineTool)
|
BLAST against rRNA db, scatter | |
| cmsearch_wnode |
cmsearch_wnode.cwl
(CommandLineTool)
|
Run genomic CMsearch (5S rRNA), execution |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annots | File |
Permalink:
https://w3id.org/cwl/view/git/21baa197e2c87a71e48794cef96d24c52518a99c/bacterial_noncoding/wf_gcmsearch.cwl
