Workflow: predictions.cwl
Fetched 2023-01-21 16:15:11 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| gpu | Integer (Optional) | ||
| slide | File | ||
| tumor-label | String | ||
| tumor-level | Integer | ||
| tumor-filter | String | ||
| tissue-low-label | String | ||
| tissue-low-level | Integer | ||
| tumor-batch-size | Integer (Optional) | ||
| tumor-chunk-size | Integer (Optional) | ||
| tissue-high-label | String | ||
| tissue-high-level | Integer | ||
| tissue-high-filter | String | ||
| tissue-low-batch-size | Integer (Optional) | ||
| tissue-low-chunk-size | Integer (Optional) | ||
| tissue-high-batch-size | Integer (Optional) | ||
| tissue-high-chunk-size | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| classify-tumor |
classify_tumor.cwl
(CommandLineTool)
|
||
| extract-tissue-low |
extract_tissue.cwl
(CommandLineTool)
|
||
| extract-tissue-high |
extract_tissue.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| tumor | File | ||
| tissue | File |
Permalink:
https://w3id.org/cwl/view/git/5f511b75e0cb77f6073cdd5d39354248f829add1/cwl/predictions.cwl
