Workflow: id_to_json_workflow.cwl
Fetched 2024-10-08 12:12:50 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
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- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU Lesser General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| tag | String | which entry in the credential file to use |
must match the first element in one of the lines of the credentials input |
| query | File | SQL query to run | |
| project | String | project UUID, or name within the given 'workspace' | |
| workspace | String | workspace UUID or name | |
| credentials | File | Format is tag:user:pass:url |
File name doesn't matter, will be made available to the iseq tool as $HOME/.iseq |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| convert_to_JSON |
tsv_to_json.cwl
(CommandLineTool)
|
Based upon scripts/tsv_to_json.py by Artem Kushner, Laura Gutierrez Funderburk |
|
| download_project |
downloader.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| results | File |
Permalink:
https://w3id.org/cwl/view/git/4b98ab2f65e2d4f68bd05d5719eadbbad14e94e1/cwl/id_to_json_workflow.cwl
