Workflow: build_splice_variant_graphs_workflow.cwl
Fetched 2023-01-05 01:32:01 GMT
Verified with cwltool version 3.1.20221201130942
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This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| gtf_file | File | ||
| output_prefix | String | ||
| splice_graph_type | String | ||
| tx_features_files | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| generate_transcript_db |
generate_transcript_db.cwl
(CommandLineTool)
|
||
| generate_splice_graph_features |
generate_splice_graph_features.cwl
(CommandLineTool)
|
||
| generate_splice_graph_variants |
find_splice_graph_variants.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| splice_graph_features_file | File | ||
| splice_graph_variants_file | File |
Permalink:
https://w3id.org/cwl/view/git/6e92e70511fa72f6aaef75b54bcc7d1ebbe95b65/cwl/build_splice_variant_graphs_workflow.cwl
