- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
fastq1 | File[] | ||
fastq2 | File[] | ||
fastq3 | File[] | ||
fastq4 | File[] | ||
threads | Integer | ||
metadata | File | ||
genomeDir | Directory | ||
annotation | File | ||
EdgeR_script | File | ||
subject_name1 | String | ||
subject_name2 | String | ||
subject_name3 | String | ||
subject_name4 | String | ||
featurecounts_script | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
edger |
../tools/edger.cwl
(CommandLineTool)
|
||
samtools_1 |
../tools/samtools.cwl
(CommandLineTool)
|
||
samtools_2 |
../tools/samtools.cwl
(CommandLineTool)
|
||
samtools_3 |
../tools/samtools.cwl
(CommandLineTool)
|
||
samtools_4 |
../tools/samtools.cwl
(CommandLineTool)
|
||
star_folder |
../tools/folder.cwl
(ExpressionTool)
|
||
edger_folder |
../tools/folder.cwl
(ExpressionTool)
|
||
featurecounts |
../tools/featurecounts.cwl
(CommandLineTool)
|
||
star_readmap_1 |
../tools/STAR_readmap.cwl
(CommandLineTool)
|
||
star_readmap_2 |
../tools/STAR_readmap.cwl
(CommandLineTool)
|
||
star_readmap_3 |
../tools/STAR_readmap.cwl
(CommandLineTool)
|
||
star_readmap_4 |
../tools/STAR_readmap.cwl
(CommandLineTool)
|
||
samtools_folder |
../tools/folder.cwl
(ExpressionTool)
|
||
featurecounts_folder |
../tools/folder.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
edger_out | Directory | ||
samtools_out | Directory | ||
star_readmap_out | Directory | ||
featurecounts_out | Directory |
Permalink:
https://w3id.org/cwl/view/git/ff0e5dfe44fb85900b5563ab340de8ad3d952eb5/workflows/star_samtools_featurecounts_edger.cwl