Workflow: hisat2_index.cwl
Fetched 2023-01-04 06:04:50 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| gtf | File[] | ||
| fasta | File[] | ||
| ht2base | String | ||
| threads | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| hisat2_ss |
../tools/hisat2_ss.cwl
(CommandLineTool)
|
||
| hisat2_exon |
../tools/hisat2_exon.cwl
(CommandLineTool)
|
||
| hisat2_build |
../tools/hisat2_build.cwl
(CommandLineTool)
|
||
| hisat2_build_folder |
../tools/folder.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| ht_out | Directory | ||
| log_out | File | ||
| exon_out | File | ||
| splice_sites_out | File |
Permalink:
https://w3id.org/cwl/view/git/ff0e5dfe44fb85900b5563ab340de8ad3d952eb5/workflows/hisat2_index.cwl
