Workflow: MICCAI 2024 3DTeethLand Challenge Evaluation Test
Fetched 2025-05-05 19:15:51 GMT
Verified with cwltool version 3.1.20230201224320
this is a test
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| organizers | String | User or team ID for challenge organizers | |
| submissionId | Integer | Submission ID | |
| synapseConfig | File | filepath to .synapseConfig file | |
| adminUploadSynId | String | Synapse Folder ID accessible by the admin | |
| submitterUploadSynId | String | Synapse Folder ID accessible by the submitter |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| score |
steps/score.cwl
(CommandLineTool)
|
Score predictions file | |
| validate |
steps/validate.cwl
(CommandLineTool)
|
Validate predictions file | |
| check_status |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/check_status.cwl
(ExpressionTool)
|
Check submission status |
Check the current submission status; if INVALID, throw an exception to end the workflow. |
| add_score_annots |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/annotate_submission.cwl
(CommandLineTool)
|
Annotate submission |
Annotate an existing submission with string values (variations can be written to also pass along other types, such as long or float). |
| add_status_annots |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/annotate_submission.cwl
(CommandLineTool)
|
Annotate submission |
Annotate an existing submission with string values (variations can be written to also pass along other types, such as long or float). |
| send_score_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/score_email.cwl
(CommandLineTool)
|
Email scores |
Send an email of the evaluation scores back to the submitter and, if on a submission team, their teammates. |
| download_submission |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/get_submission.cwl
(CommandLineTool)
|
Download submission from Synapse | |
| organizers_log_access |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/set_permissions.cwl
(CommandLineTool)
|
Set Synapse permissions |
Set the permission level for the given Synapse entity; a common use case would be to give the submitter `download` permissions to their log files (by default, only the creator, aka the infrastructure person, has access). |
| send_validation_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v4.1/cwl/validate_email.cwl
(CommandLineTool)
|
Email validation results |
Send an email of the validation results back to the submitter and, if on a submission team, their teammates. |
Outputs
There are no outputs in this workflow
https://w3id.org/cwl/view/git/b63d819ba763435496e9608d0b5af304360961e9/workflow_submit_json.cwl
