Workflow: snpeff_all.cwl

Fetched 2024-02-28 21:33:08 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
gtf File
vcf File
dbdir String
dbname String
genome File
protein File
outprefix String

Steps

ID Runs Label Doc
snpeff_build
../tools/snpeff-build.cwl (CommandLineTool)
snpeff_annotate
../tools/snpeff-annotate.cwl (CommandLineTool)

Outputs

ID Type Label Doc
snpeff_genes File
snpeff_summary File
snpeff_vcf_with_tbi File
Permalink: https://w3id.org/cwl/view/git/356c47bb87dbcd9a9cb565f147b0dad298dea6cb/workflows/snpeff_all.cwl