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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam | File | ||
threads | Integer | ||
outprefix | String |
Any string that can distinguish sample. |
|
reference | File |
FASTA file for reference genome |
|
filter-expression | String |
VCF filter condition for GATK-VariantFiltration |
Steps
There are no steps in this workflow
Outputs
ID | Type | Label | Doc |
---|---|---|---|
hc_gvcf | File | ||
varonly_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/356c47bb87dbcd9a9cb565f147b0dad298dea6cb/workflows/bam2vcf.cwl