Workflow: assemble_and_annotation.cwl
Fetched 2023-01-11 02:19:25 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq1 | File | ||
| fastq2 | File | ||
| prefix | String |
Prefix for assembled genome file |
|
| threads | Integer | ||
| coverage | Integer | ||
| dfast_cpu | Integer | ||
| genome_size | Float |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| assemble |
platanusB-default.cwl
(Workflow)
|
||
| annotation |
../tool/dfast/dfast.cwl
(CommandLineTool)
|
||
| preprocessing |
preprocessing.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| stats | File | ||
| scaffold | File | ||
| dfast_result | Directory | ||
| subsampled_fastq1 | File | ||
| subsampled_fastq2 | File |
Permalink:
https://w3id.org/cwl/view/git/6472a8e0e9b13eaf21177cc2c2886f0c303e0e16/cwl/workflow/assemble_and_annotation.cwl
