Workflow: conditional_bamindex.cwl
Fetched 2023-01-12 16:06:04 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| thread_count | Long |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| empty_sqlite |
../../tools/touch.cwl
(CommandLineTool)
|
||
| format_sqlite |
../../tools/emit_file_format.cwl
(ExpressionTool)
|
||
| samtools_index |
../../tools/samtools_index.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File | ||
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/d6c0acb0a5e8546dc96463c9d184ca96548e22b3/workflows/bamfastq_align/conditional_bamindex.cwl
