CWL Workflow: status_postgres.cwl

This workflow is Open Source and may be reused according to the terms of: Apache License 2.0

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Title	Doc
status	String
db_cred	File
hostname	String
job_uuid	String
step_token	File
table_name	String
thread_count	Long
host_ipaddress	String
db_cred_section	String
host_macaddress	String
indexd_bai_uuid	String
indexd_bam_uuid	String
cwl_job_git_hash	String
cwl_job_git_repo	String
cwl_job_rel_path	String
input_bam_gdc_id	String
input_bam_md5sum	String
known_snp_gdc_id	String
indexd_sqlite_uuid	String
input_bam_file_size	Long
known_snp_file_size	Long
reference_fa_gdc_id	String
reference_sa_gdc_id	String
reference_amb_gdc_id	String
reference_ann_gdc_id	String
reference_bwt_gdc_id	String
reference_fai_gdc_id	String
reference_pac_gdc_id	String
slurm_resource_cores	Long
cwl_workflow_git_hash	String
cwl_workflow_git_repo	String
cwl_workflow_rel_path	String
reference_dict_gdc_id	String
known_snp_index_gdc_id	String
reference_fa_file_size	Long
reference_sa_file_size	Long
reference_amb_file_size	Long
reference_ann_file_size	Long
reference_bwt_file_size	Long
reference_fai_file_size	Long
reference_pac_file_size	Long
reference_dict_file_size	Long
known_snp_index_file_size	Long
slurm_resource_mem_megabytes	Long
slurm_resource_disk_gigabytes	Long
indexd_mirna_profiling_tar_uuid	String
indexd_mirna_profiling_mirnas_quant_uuid	String
indexd_mirna_profiling_isoforms_quant_uuid	String

ID	Runs	Label	Doc
emit_json	../../tools/emit_json.cwl (ExpressionTool)
json_to_sqlite	../../tools/json_to_sqlite.cwl (CommandLineTool)
sqlite_to_postgres	../../tools/sqlite_to_postgres_hirate.cwl (CommandLineTool)

ID	Type	Label	Doc
token	File