- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bioclient_config | File | ||
readgroup_fastq_pe_uuid | https://w3id.org/cwl/view/git/b0ff19e4e2944340dca1aceaa20ba10624fa59d0/tools/readgroup.yml#readgroup_fastq_pe_uuid |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
extract_forward_fastq |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
extract_reverse_fastq |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
emit_readgroup_fastq_pe_file |
../../tools/emit_readgroup_fastq_pe_file.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output | https://w3id.org/cwl/view/git/b0ff19e4e2944340dca1aceaa20ba10624fa59d0/tools/readgroup.yml#readgroup_fastq_pe_file |
Permalink:
https://w3id.org/cwl/view/git/b0ff19e4e2944340dca1aceaa20ba10624fa59d0/workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl