Workflow: extract_readgroups_bam_http.cwl
Fetched 2023-01-05 00:51:56 GMT
Verified with cwltool version 3.1.20221201130942
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- |
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| gdc_token | File | ||
| readgroups_bam_uuid | https://w3id.org/cwl/view/git/a57b8f0d8708078e87f13297e065d72db10e38a0/tools/readgroup.yml#readgroups_bam_uuid |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| extract_bam |
../../tools/gdc_get_object.cwl
(CommandLineTool)
|
||
| emit_readgroups_bam_file |
../../tools/emit_readgroups_bam_file.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | https://w3id.org/cwl/view/git/a57b8f0d8708078e87f13297e065d72db10e38a0/tools/readgroup.yml#readgroups_bam_file |
Permalink:
https://w3id.org/cwl/view/git/a57b8f0d8708078e87f13297e065d72db10e38a0/workflows/bamfastq_align/extract_readgroups_bam_http.cwl
