- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
input | https://w3id.org/cwl/view/git/18affdd927cc388fab2c113dc2ec6df782af2a52/tools/readgroup.yml#readgroup_fastq_pe_file | ||
job_uuid | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
json_to_sqlite |
../../tools/json_to_sqlite.cwl
(CommandLineTool)
|
||
fastq_cleaner_pe |
../../tools/fastq_cleaner_pe.cwl
(CommandLineTool)
|
||
emit_readgroup_fastq_pe_file |
../../tools/emit_readgroup_fastq_pe_file.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output | https://w3id.org/cwl/view/git/18affdd927cc388fab2c113dc2ec6df782af2a52/tools/readgroup.yml#readgroup_fastq_pe_file | ||
sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/18affdd927cc388fab2c113dc2ec6df782af2a52/workflows/bamfastq_align/fastq_clean_pe.cwl