- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
job_uuid | String | ||
start_token | File | ||
thread_count | Long | ||
bioclient_config | File | ||
input_bam_gdc_id | String | ||
input_bam_file_size | Long | ||
bioclient_load_bucket | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
transform |
transform.cwl
(Workflow)
|
||
extract_bam |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
load_sqlite |
../../tools/bio_client_upload_pull_uuid.cwl
(CommandLineTool)
|
||
emit_sqlite_uuid |
../../tools/emit_json_value.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
indexd_sqlite_uuid | String |
Permalink:
https://w3id.org/cwl/view/git/1326fb7fedca91a274fb7596c9052a4d279eacf9/workflows/fastq_readgroup_stats/etl.cwl