Workflow: readgroups_bam_to_readgroups_fastq_lists.cwl

Fetched 2021-01-14 05:05:49 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
readgroups_bam_file https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroups_bam_file

Steps

ID Runs Label Doc
biobambam_bamtofastq
../../tools/biobambam2_bamtofastq.cwl (CommandLineTool)
emit_readgroup_o1_files
../../tools/emit_readgroup_fastq_se_files.cwl (ExpressionTool)
emit_readgroup_o2_files
../../tools/emit_readgroup_fastq_se_files.cwl (ExpressionTool)
emit_readgroup_pe_files
../../tools/emit_readgroup_fastq_pe_files.cwl (ExpressionTool)
emit_readgroup_se_files
../../tools/emit_readgroup_fastq_se_files.cwl (ExpressionTool)

Outputs

ID Type Label Doc
o1_file_list https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file[]
o2_file_list https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file[]
pe_file_list https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_pe_file[]
se_file_list https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file[]
Permalink: https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl