Workflow: fastq_clean_se.cwl

Fetched 2021-01-14 05:03:10 GMT
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Inputs

ID Type Title Doc
input https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file
job_uuid String

Steps

ID Runs Label Doc
json_to_sqlite
../../tools/json_to_sqlite.cwl (CommandLineTool)
fastq_cleaner_se
../../tools/fastq_cleaner_se.cwl (CommandLineTool)
emit_readgroup_fastq_se_file
../../tools/emit_readgroup_fastq_se_file.cwl (ExpressionTool)

Outputs

ID Type Label Doc
output https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file
sqlite File
Permalink: https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/workflows/bamfastq_align/fastq_clean_se.cwl