- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/test/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
input | File | ||
taxid | Integer | ||
blastdb | String[] | ||
gc_cache | File | ||
taxon_db | File | ||
asn_cache | Directory[] | ||
genus_list | Integer[] | ||
gencoll_asn | File | ||
naming_sqlite | File | ||
blast_hits_cache | File (Optional) | ||
scatter_gather_nchunks | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
bacterial_orthology |
wf_bacterial_orthology.cwl
(Workflow)
|
bacterial_orthology | |
get_prokaryotic_assembly_for_orthology |
../progs/get_orthologous_assembly.cwl
(CommandLineTool)
|
get_orthologous_assembly |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output | File |
Permalink:
https://w3id.org/cwl/view/git/5b498b4c4f17bb8f17e6886aa4c5661d7aba34fc/bacterial_orthology/wf_bacterial_orthology_conditional.cwl