Workflow: align_merge_sas
Fetched 2023-01-11 05:48:31 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/f58bb8121e49a72cf7419a4a38c08f01b931dd37/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| filter | String (Optional) | ||
| blastdb | String | ||
| compart | Boolean | ||
| collated | Boolean | ||
| asn_cache | Directory | ||
| fill_gaps | Boolean | ||
| blast_align | File | ||
| blastdb_dir | Directory | ||
| max_discontinuity | Integer (Optional) | ||
| allow_intersection | Boolean | ||
| top_compartment_only | Boolean |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| align_merge |
../progs/align_merge.cwl
(CommandLineTool)
|
align_merge |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| align | File |
Permalink:
https://w3id.org/cwl/view/git/f58bb8121e49a72cf7419a4a38c08f01b931dd37/task_types/tt_align_merge_sas.cwl
