Workflow: Run genomic CMsearch (5S rRNA)

Fetched 2023-01-05 04:58:09 GMT
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Inputs

ID Type Title Doc
seqids File
taxon_db File
asn_cache Directory
model_path File
rfam_stockholm File
rfam_amendments File

Steps

ID Runs Label Doc
Run_genomic_CMsearch_5S_rRNA_dump
gpx_qdump.cwl (CommandLineTool)
Run genomic CMsearch (5S rRNA), gather
Run_genomic_CMsearch_5S_rRNA_wnode
cmsearch_wnode.cwl (CommandLineTool)
Run genomic CMsearch (5S rRNA), execution
Run_genomic_CMsearch_5S_rRNA_submit
gpx_qsubmit_gcmsearch.cwl (CommandLineTool)
Run genomic CMsearch (5S rRNA), scatter
Post_process_CMsearch_annotations_5S_rRNA
annot_merge.cwl (CommandLineTool)
Post-process CMsearch annotations

Outputs

ID Type Label Doc
annots File
Permalink: https://w3id.org/cwl/view/git/e71779665f42fcf34601b0f65e030bb0dd47fa79/bacterial_noncoding/wf_gcmsearch.cwl