Workflow: BLAST against rRNA db
Fetched 2023-01-04 07:59:33 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/e71779665f42fcf34601b0f65e030bb0dd47fa79/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| blastdb | String | ||
| outname | String | ||
| asn_cache | Directory | ||
| blastdb_dir | Directory | ||
| product_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Merge_nS_rRNA_Alignments |
align_merge.cwl
(CommandLineTool)
|
Merge rRNA Alignments | |
| Generate_nS_rRNA_Annotation |
ribosomal_align2annot.cwl
(CommandLineTool)
|
Generate rRNA Annotation | |
| BLAST_against_nS_rRNA_db_gpx_qsubmit |
gpx_qsubmit_blastn.cwl
(CommandLineTool)
|
BLAST against rRNA db, scatter | |
| BLAST_against_nS_rRNA_db_blastn_wnode |
blastn_wnode.cwl
(CommandLineTool)
|
BLAST against rRNA db, execution | |
| BLAST_against_nS_rRNA_db_gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
BLAST against rRNA db, gather |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annotations | File |
Permalink:
https://w3id.org/cwl/view/git/e71779665f42fcf34601b0f65e030bb0dd47fa79/bacterial_noncoding/wf_blastn.cwl
