Workflow: assemble.cwl
Fetched 2025-09-08 15:45:26 GMT
Verified with cwltool version 3.1.20230201224320
Assemble a set of reads using SKESA
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/e2832ecc1c5f64a9e522bb1b24cd45f8bb2ca429/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| srr | String (Optional) | ||
| reads | File (Optional) | ||
| uuid_in | File (Optional) | ||
| make_uuid | Boolean (Optional) | ||
| no_internet | Boolean (Optional) | ||
| output_name | String (Optional) | ||
| report_usage | Boolean |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| ping_stop |
progs/pinger.cwl
(CommandLineTool)
|
pinger | |
| ping_start |
progs/pinger.cwl
(CommandLineTool)
|
pinger | |
| skesa_assemble |
progs/skesa.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| contigs | File | ||
| uuid_out | File |
Permalink:
https://w3id.org/cwl/view/git/e2832ecc1c5f64a9e522bb1b24cd45f8bb2ca429/assemble.cwl
