Workflow: BLAST against rRNA db

Fetched 2023-01-04 07:48:10 GMT
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Inputs

ID Type Title Doc
seqids File
blastdb String
outname String
asn_cache Directory
blastdb_dir Directory
product_name String

Steps

ID Runs Label Doc
Merge_nS_rRNA_Alignments
align_merge.cwl (CommandLineTool)
Merge rRNA Alignments
Generate_nS_rRNA_Annotation
ribosomal_align2annot.cwl (CommandLineTool)
Generate rRNA Annotation
BLAST_against_nS_rRNA_db_gpx_qsubmit
gpx_qsubmit_blastn.cwl (CommandLineTool)
BLAST against rRNA db, scatter
BLAST_against_nS_rRNA_db_blastn_wnode
blastn_wnode.cwl (CommandLineTool)
BLAST against rRNA db, execution
BLAST_against_nS_rRNA_db_gpx_make_outputs
gpx_make_outputs.cwl (CommandLineTool)
BLAST against rRNA db, gather

Outputs

ID Type Label Doc
annotations File
Permalink: https://w3id.org/cwl/view/git/b12ec8c8e832151033b9e6c0a76a3c3df18d45da/bacterial_noncoding/wf_blastn.cwl