Workflow: checkm_wnode
Fetched 2024-04-24 04:41:48 GMT
Verified with cwltool version 3.1.20230201224320
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- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/96dbb414d287f4382e2d477fb1851aeaa5f14f2b/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| lds2 | File | ||
| seqids | File | ||
| proteins | File | ||
| taxon_db | File | ||
| assm_to_prots | File | ||
| checkm_data_path | Directory | ||
| filter_for_raw_checkm | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qdump |
../progs/gpx_qdump.cwl
(CommandLineTool)
|
gpx_qdump | |
| xmlformat |
../progs/xmlformat.cwl
(CommandLineTool)
|
||
| gpx_qsubmit |
../progs/gpx_qsubmit_proteins_xml.cwl
(CommandLineTool)
|
gpx_qsubmit |
This workflow is specialized for the simple case of XML input that just need a little bit of massaging. We need to have a flavored file because gpx_qsubmit reacts on the presence of a particular form of input instead of relying on a presence of actual non-empty container of objects |
| checkm_wnode |
../progs/checkm_wnode.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| checkm_raw | File | ||
| checkm_results | File |
Permalink:
https://w3id.org/cwl/view/git/96dbb414d287f4382e2d477fb1851aeaa5f14f2b/task_types/tt_checkm_wnode.cwl
