- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/92118627c800e4addb7e29b9dabcca073a5bae71/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
task | String | ||
evalue | Float (Optional) | ||
compart | Boolean (Optional) | ||
gapopen | Integer (Optional) | ||
affinity | String | ||
gc_cache | File | ||
asn_cache | Directory | ||
gapextend | Integer (Optional) | ||
nogenbank | Boolean (Optional) | ||
word_size | Integer (Optional) | ||
gencoll_asn | File | ||
window_size | Integer (Optional) | ||
gc_seq_cache | Directory | ||
merge_engine | String (Optional) | ||
soft_masking | String (Optional) | ||
max_target_seqs | Integer (Optional) | ||
ref_gencoll_asn | File | ||
workers_per_cpu | Float (Optional) | ||
max_bases_per_call | Integer (Optional) | ||
merge_align_filter | String (Optional) | ||
queries_gc_id_list | File | ||
subjects_gc_id_list | File | ||
use_common_components | Boolean |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
gpx_qdump |
../progs/gpx_qdump.cwl
(CommandLineTool)
|
gpx_qdump | |
gpx_qsubmit |
../progs/gpx_qsubmit-xml.cwl
(CommandLineTool)
|
gpx_qsubmit |
This workflow is specialized for the case when there is an XML input |
assm_assm_blastn_wnode |
../progs/assm_assm_blastn_wnode.cwl
(CommandLineTool)
|
assm_assm_blastn_wnode | |
assm_assm_blastn_create_jobs |
../progs/assm_assm_blastn_create_jobs.cwl
(CommandLineTool)
|
assm_assm_blastn_create_jobs |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/92118627c800e4addb7e29b9dabcca073a5bae71/task_types/tt_assm_assm_blastn_wnode.cwl