Workflow: BLAST against rRNA db
Fetched 2025-03-07 03:32:48 GMT
Verified with cwltool version 3.1.20230201224320
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- Default Values
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/551493f5c24b757a46cd22821a05e6ac6dcceb7f/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| blastdb | String | ||
| outname | String | ||
| asn_cache | Directory | ||
| blastdb_dir | Directory | ||
| product_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Merge_nS_rRNA_Alignments |
align_merge.cwl
(CommandLineTool)
|
Merge rRNA Alignments | |
| Generate_nS_rRNA_Annotation |
ribosomal_align2annot.cwl
(CommandLineTool)
|
Generate rRNA Annotation | |
| BLAST_against_nS_rRNA_db_gpx_qsubmit |
gpx_qsubmit_blastn.cwl
(CommandLineTool)
|
BLAST against rRNA db, scatter | |
| BLAST_against_nS_rRNA_db_blastn_wnode |
blastn_wnode.cwl
(CommandLineTool)
|
BLAST against rRNA db, execution | |
| BLAST_against_nS_rRNA_db_gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
BLAST against rRNA db, gather |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annotations | File |
Permalink:
https://w3id.org/cwl/view/git/551493f5c24b757a46cd22821a05e6ac6dcceb7f/bacterial_noncoding/wf_blastn.cwl
