- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/505b91e41741ccbcd5ebd2b6a09a3be604f9ece3/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
entry | File | ||
asn_cache | Directory | ||
kmer_file_list | File[] | ||
kmer_output_dir | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
kmer_extract_wnode |
../progs/kmer_extract_wnode.cwl
(CommandLineTool)
|
kmer_extract_wnode | |
submit_kmer_extract |
../progs/submit_kmer_extract.cwl
(CommandLineTool)
|
submit_kmer_extract |
We need $(inputs.seq_entry) to be a local file to the current subdirectory since the file name goes to output.xml, a notorious file with files. |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
out_kmer_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/505b91e41741ccbcd5ebd2b6a09a3be604f9ece3/task_types/tt_kmer_seq_entry_extract_wnode.cwl