Workflow: Seed Protein Alignments
Fetched 2025-10-07 21:54:59 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/4e7b8f243f5356653edd286eab24f419f39da189/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| asn_cache | Directory | ||
| db_gencode | Integer | ||
| blastdb_dir | Directory | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qsubmit |
gpx_qsubmit_seqids.cwl
(CommandLineTool)
|
Seed Protein Alignments, scatter | |
| tblastn_wnode |
tblastn_wnode_db.cwl
(CommandLineTool)
|
Seed Protein Alignments, execute | |
| gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
Seed Protein Alignments, gather |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/4e7b8f243f5356653edd286eab24f419f39da189/protein_alignment/wf_seed_seqids.cwl
