Workflow: Seed Search Compartments
Fetched 2026-10-30 04:49:51 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| asn_cache | Directory | ||
| db_gencode | Integer | ||
| compartments | File | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_dump |
gpx_qdump.cwl
(CommandLineTool)
|
Seed Search Compartments, gather | |
| gpx_qsubmit |
gpx_qsubmit.cwl
(CommandLineTool)
|
Seed Search Compartments, scatter | |
| tblastn_wnode |
tblastn_wnode.cwl
(CommandLineTool)
|
Seed Search Compartments, execute\" |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734/protein_alignment/wf_seed.cwl
