Workflow: bacterial_orthology_cond
Fetched 2023-01-04 17:21:20 GMT
Verified with cwltool version 3.1.20221201130942
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- Default Values
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/369afa7090a7480e6a0b144eff967a4a52b6fde2/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input | File | ||
| taxid | Integer | ||
| blastdb | String[] | ||
| gc_cache | File | ||
| taxon_db | File | ||
| asn_cache | Directory[] | ||
| genus_list | Integer[] | ||
| gencoll_asn | File | ||
| naming_sqlite | File | ||
| blast_hits_cache | File (Optional) | ||
| scatter_gather_nchunks | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bacterial_orthology |
wf_bacterial_orthology.cwl
(Workflow)
|
bacterial_orthology | |
| get_prokaryotic_assembly_for_orthology |
../progs/get_orthologous_assembly.cwl
(CommandLineTool)
|
get_orthologous_assembly |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/369afa7090a7480e6a0b144eff967a4a52b6fde2/bacterial_orthology/wf_bacterial_orthology_conditional.cwl
