Workflow: trnascan_wnode and gpx_qdump combined
Fetched 2026-06-09 09:52:41 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/2a81fcde75ca7665814c8de2210c7bc3121a08a3/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| taxid | Integer | ||
| taxon_db | File | ||
| asn_cache | Directory | ||
| input_jobs | File | ||
| superkingdom | Integer | ||
| gcode_othmito | String (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Run_tRNAScan_dump |
gpx_qdump.cwl
(CommandLineTool)
|
Run tRNAScan, gather | |
| Run_tRNAScan_wnode |
trnascan_wnode.cwl
(CommandLineTool)
|
Run tRNAScan, execution |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| intermediate | File |
Permalink:
https://w3id.org/cwl/view/git/2a81fcde75ca7665814c8de2210c7bc3121a08a3/bacterial_trna/wf_scan_and_dump.cwl
