Workflow: kmer_seq_entry_extract_wnode
Fetched 2023-01-09 12:45:27 GMT
Verified with cwltool version 3.1.20221201130942
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/2801ce53744a085580a8de91cd007c45146b51e8/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| entry | File | ||
| asn_cache | Directory | ||
| kmer_file_list | File[] | ||
| kmer_output_dir | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| kmer_extract_wnode |
../progs/kmer_extract_wnode.cwl
(CommandLineTool)
|
kmer_extract_wnode | |
| submit_kmer_extract |
../progs/submit_kmer_extract.cwl
(CommandLineTool)
|
submit_kmer_extract |
We need $(inputs.seq_entry) to be a local file to the current subdirectory since the file name goes to output.xml, a notorious file with files. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out_kmer_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/task_types/tt_kmer_seq_entry_extract_wnode.cwl
