Workflow: Seed Protein Alignments
Fetched 2024-10-17 21:31:35 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/22ffe27d9d4a899def7592d75d5871c1856adbdb/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| asn_cache | Directory | ||
| db_gencode | Integer | ||
| blastdb_dir | Directory | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qsubmit |
gpx_qsubmit_1.cwl
(CommandLineTool)
|
Seed Protein Alignments, scatter | |
| tblastn_wnode |
tblastn_wnode_1.cwl
(CommandLineTool)
|
Seed Protein Alignments, execute | |
| gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
Seed Protein Alignments, gather |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/22ffe27d9d4a899def7592d75d5871c1856adbdb/protein_alignment/wf_seed_1.cwl
