- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/09774c78a965dd8f6c315597a53eef5998a3c1b6/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
seg | String | ||
lds2 | File | ||
ofmt | String | ||
dbsize | String | ||
evalue | Float (Optional) | ||
compart | Boolean | ||
max_jobs | Integer | ||
no_merge | Boolean | ||
proteins | File | ||
asn_cache | Directory[] | ||
nogenbank | Boolean | ||
threshold | Integer | ||
word_size | Integer | ||
input_jobs | File | ||
blastdb_dir | Directory | ||
align_filter | String | ||
soft_masking | String | ||
top_by_score | Integer | ||
extra_coverage | Integer (Optional) | ||
max_target_seqs | Integer | ||
comp_based_stats | String | ||
allow_intersection | Boolean | ||
short_protein_threshold | Integer (Optional) |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
gpx_qdump |
../progs/gpx_qdump.cwl
(CommandLineTool)
|
gpx_qdump | |
cluster_blastp_wnode |
../progs/cluster_blastp_wnode.cwl
(CommandLineTool)
|
cluster_blastp_wnode |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/09774c78a965dd8f6c315597a53eef5998a3c1b6/task_types/tt_cluster_and_qdump.cwl