Workflow: kmer_ref_compare_wnode
Fetched 2023-01-05 06:21:04 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| kmer_list | File | ||
| dist_method | String | ||
| score_method | String | ||
| ref_kmer_list | File | ||
| kmer_cache_sqlite | File | ||
| minhash_signature | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_make_outputs |
../progs/gpx_make_outputs.cwl
(CommandLineTool)
|
gpx_make_outputs | |
| kmer_compare_wnode |
../progs/kmer_compare_wnode.cwl
(CommandLineTool)
|
kmer_compare_wnode | |
| submit_kmer_compare |
../progs/submit_kmer_compare.cwl
(CommandLineTool)
|
submit_kmer_compare |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| outdir | Directory |
we hope to use this to pass instead of file list |
|
| distances | File |
Permalink:
https://w3id.org/cwl/view/git/001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d/task_types/tt_kmer_ref_compare_wnode.cwl
