Workflow: FASTQ Vector Removal
Fetched 2023-01-04 16:03:03 GMT
Verified with cwltool version 3.1.20221201130942
This workflow convert fastq to multiple fasta files
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/cwl-ngs-workflows-cbb/dde32ff6c8e653a4e6b93316f28737706d5ec367/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq1 | File | ||
| fastq2 | File (Optional) | ||
| total_per_file | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| split_fasta |
../../tools/python/split-fasta.cwl
(CommandLineTool)
|
split_fasta |
Split fasta file in multiple files |
| create_fasta_from_fastq |
../../tools/basic/fastq2fasta.cwl
(CommandLineTool)
|
Create FASTA from FASTQ |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File[] |
Permalink:
https://w3id.org/cwl/view/git/dde32ff6c8e653a4e6b93316f28737706d5ec367/workflows/File-formats/fastq-to-splitted-fasta.cwl
