Workflow: Create tagAlign file
Fetched 2023-01-08 23:29:33 GMT
Verified with cwltool version 3.1.20221201130942
This workflow creates tagAlign file
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/cwl-ngs-workflows-cbb/b8f18a03ffbd7d5b78a7f220686b81d539686e98/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam_file | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| awk |
../../tools/basic/awk.cwl
(CommandLineTool)
|
awk |
AWK command |
| gzip |
../../tools/basic/gzip.cwl
(CommandLineTool)
|
gzip |
Compress files |
| bamtobed |
../../tools/bedtools/bedtools-bamtobed.cwl
(CommandLineTool)
|
bedtools-bamtobed |
The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/b8f18a03ffbd7d5b78a7f220686b81d539686e98/workflows/File-formats/create-tagAlign.cwl
