Workflow: merge-bam-parallel
Fetched 2023-01-09 00:12:41 GMT
Verified with cwltool version 3.1.20221201130942
This workflow merge BAM files per condition in parallel
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/cwl-ngs-workflows-cbb/6eb7fec3bd018addf02bb3285cb56d9453319d5d/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bams | 44e45a58fdee56a496ee1c69a5d59b09[] | ||
| out_bam | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bam_merge |
../../tools/samtools/samtools-merge.cwl
(CommandLineTool)
|
Samtools-merge |
Samtools is a suite of programs for interacting with high-throughput sequencing data |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| merged_bams | File[] |
Permalink:
https://w3id.org/cwl/view/git/6eb7fec3bd018addf02bb3285cb56d9453319d5d/workflows/File-formats/merge-bam-parallel.cwl
