Workflow: merge-bam-parallel
Fetched 2023-01-03 19:41:05 GMT
Verified with cwltool version 3.1.20221201130942
This workflow merge BAM files per condition in parallel
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/cwl-ngs-workflows-cbb/433720e6ba8c2d85b15de3ffb9ce1236f08978a4/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bams | 3ec1c2c2bf36467a06d240197df74501[] | ||
| out_bam | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bam_merge |
../../tools/samtools/samtools-merge.cwl
(CommandLineTool)
|
Samtools-merge |
Samtools is a suite of programs for interacting with high-throughput sequencing data |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| merged_bams | File[] |
Permalink:
https://w3id.org/cwl/view/git/433720e6ba8c2d85b15de3ffb9ce1236f08978a4/workflows/File-formats/merge-bam-parallel.cwl
