Workflow: MEME motif
Fetched 2024-06-13 09:13:30 GMT
Verified with cwltool version 3.1.20230201224320
This workflow uses MEME suite for motif finding
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/cwl-ngs-workflows-cbb/1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bed | File[] | ||
| genome | File | ||
| memedb | File[] | ||
| nmotifs | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| memechip |
../../tools/meme/meme-chip.cwl
(CommandLineTool)
|
meme-meme-chip |
meme Suite |
| fastafrombed |
../File-formats/fasta-from-bed.cwl
(Workflow)
|
Creates FASTA file from BED coordinates |
This workflow creates FASTA file from BED coordinates |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| meme_out | Directory[] |
Permalink:
https://w3id.org/cwl/view/git/1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49/workflows/ChIP-Seq/meme-motif.cwl
