Workflow: run_workflow_234.cwl
Fetched 2023-01-19 13:22:35 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| user_query | File (Optional) | ||
| user_db_dir | Directory (Optional) | ||
| user_search_db | String | ||
| user_search_db_tsv | File (Optional) | ||
| user_workflow_results | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| blast_step |
blastn_docker.cwl
(CommandLineTool)
|
Example CWL script to run a BLAST search in docker | |
| outlier_step |
outlier_docker.cwl
(CommandLineTool)
|
||
| assign_taxon_step |
assign_taxon_docker.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_out_class | File |
Permalink:
https://w3id.org/cwl/view/git/deb45393512c8eb82de1adec82982b439933d7cd/outlier-hit-detection-pipeline/run_workflow_234.cwl
