- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
taxid | Integer | ||
seqids | File | ||
taxon_db | File | ||
asn_cache | Directory |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
Get_TRNA_model |
../progs/gencode2trnamodel.cwl
(ExpressionTool)
|
||
Run_tRNAScan_dump |
gpx_qdump.cwl
(CommandLineTool)
|
Run tRNAScan, gather | |
Run_tRNAScan_wnode |
trnascan_wnode.cwl
(CommandLineTool)
|
Run tRNAScan, execution | |
Run_tRNAScan_submit |
gpx_qsubmit_trnascan.cwl
(CommandLineTool)
|
Run tRNAScan, scatter | |
Compute_Gencode_for_trna |
../progs/compute_gencode.cwl
(CommandLineTool)
|
compute_gencode | |
Run_tRNAScan_trnascan_dump |
trnascan_dump.cwl
(CommandLineTool)
|
Run tRNAScan, transform | |
Compute_Gencode_int_for_trna |
../progs/file2int.cwl
(ExpressionTool)
|
||
Compute_Superkingdom_for_trna |
../progs/compute_gencode.cwl
(CommandLineTool)
|
compute_gencode | |
Compute_Superkingdom_int_for_trna |
../progs/file2int.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
annots | File |
Permalink:
https://w3id.org/cwl/view/git/bf7e02ee89d1bb18462cefdbe0db41b09fe75236/bacterial_trna/wf_trnascan.cwl