CWL Workflow: Align reference proteins plane complete workflow

Workflow: Align reference proteins plane complete workflow

Fetched 2023-01-11 22:34:42 GMT

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ID	Type	Title	Doc
taxid	Integer
asn_cache	Directory
blastdb_dir	Directory
gc_assembly	File
compartments	File
tax_sql_file	File
uniColl_path	Directory
uniColl_asn_cache	Directory

ID	Runs	Label
cat	cat.cwl (CommandLineTool)	file concatenation
wf_seed	wf_seed.cwl (Workflow)	Seed Search Compartments
wf_seed_1	wf_seed_1.cwl (Workflow)	Seed Protein Alignments I
align_sort	align_sort.cwl (CommandLineTool)	Sort Seed Hits, align_sort
align_filter	wf_align_filter.cwl (Workflow)	Filter Protein Alignments I
bacterial_prot_src	bacterial_prot_src.cwl (CommandLineTool)	Get Proteins, bacterial_prot_src
compart_filter_prosplign	wf_compart_filter_prosplign.cwl (Workflow)	Filter Protein Seeds I; Find ProSplign Alignments I
bacterial_protalign_filter	bacterial_protalign_filter.cwl (CommandLineTool)	Filter Full-Coverage Alignments I

ID	Type	Label	Doc
align	File
align_non_match	File
universal_clusters	File

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Permalink: https://w3id.org/cwl/view/git/269d656eb8eaa5fc29a5f74cb0aa5756868b46b7/protein_alignment/wf_protein_alignment.cwl