- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
tree | String[] | ||
in_gff | File | ||
in_fasta | File | ||
scientific_name | String[] | ||
url_genomic_gff | String[] | ||
gff_release_number | Integer |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
faToTwoBit |
faToTwoBit.cwl
(CommandLineTool)
|
||
gap2bigwig |
gap2bigwig.cwl
(CommandLineTool)
|
||
add_metadata |
add_metadata.cwl
(CommandLineTool)
|
||
generate-names |
generate-names.cwl
(CommandLineTool)
|
||
samtools_faidx |
samtools_faidx.cwl
(CommandLineTool)
|
||
add-bw-track_gc |
add-bw-track_gc.cwl
(CommandLineTool)
|
||
prepare-refseqs |
prepare-refseqs.cwl
(CommandLineTool)
|
||
GCcontent2bigwig |
GCcontent2bigwig.cwl
(CommandLineTool)
|
||
flatfile-to-json |
flatfile-to-json.cwl
(CommandLineTool)
|
||
add-bw-track_gaps |
add-bw-track_gaps.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
OUT_2bi | File | ||
OUT_seq | Directory | ||
OUT_names | Directory | ||
OUT_tracks | Directory | ||
OUT_gc_bigwig | File | ||
OUT_gaps_bigwig | File | ||
OUT_tracks_conf | File | ||
OUT_trackList_json | File | ||
OUT_trackList_json_bak | File |
Permalink:
https://w3id.org/cwl/view/git/89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945/flow_apollo2_data_processing/processing/workflow.cwl